Preamble | Package aim | Method summary | Installation | Integrated usage | Detailed usage | Loading data | Binning data | Correlation of the bins | Choosing a threshold | Working with SingleCellExperiment objects | Parameter values | max_zeros | top_window_size | other_window_size | n_random | threshold

Introduction | Epistack visualisation | The plotEpisatck() function | Custom panel arrangements | Example 1: ChIP-seq coverage at peaks | data origin | data loading | Generating coverage matrices | Plotting | Example 2: DNA methylation levels and ChIP-seq coverage at gene promoters sorted according to expression levels | Obtaining the TSS coordinates | Adding expression data to the TSS coordinates | Extracting the epigenetic signals | Epistack plotting | Citation | sessionInfo()